| Cell type | Markers used for annotation |
|---|---|
| Allantois | COL6A2, COL6A1, F5, PCOLCE, VCAN |
| AM like | NOTO, TAC1, RHBDL1, TRIB3, MAL2, ID4 |
| Amnion | GABRP, WFDC2, CPE, VTCN1, GPC3 |
| Blood | LMO2, IKZF1, LAPTM5, FERMT3, LYL1 |
| Border | WNT6, TMEM54, SLC2A3, CXCL12, ID2 |
| Cardiomyocyte | FAP, ACTA2, TIMP1, COL4A1, TAGLN |
| CTB | VGLL1, KRT7, ADGRG1, SHISA5, IFI6 |
| DE | UCP2, RDX, COL9A2, FOXA2, SORL1 |
| Endo | GNG11, CD34, SOX7, MEF2C, CDH5 |
| EPI | USP44, DNMT3B, SSB, PTPRZ1, SOX2 |
| Epidermis | PRTG, TSPAN2, TPM1, COX4I2, TSTD1 |
| EVT | MCAM, CTSL, B2M, MAMU-AG, TINAGL1 |
| EXM | DEPTOR, FBN2, FRMD4B, HAND2, OAF |
|---|---|
| Foregut | ISL1, AGR3, TACSTD2, S100A14, COL2A1 |
| Hindgut | IHH, TNNC1, SOX4, SALL1, DCDC2 |
| LPM | TUBB, TMSB15A, HMGA2, PTMS, DOK4 |
| Mes | CSRP2, GPX4, COL21A1, TNNI1, DCN |
| Neural plate like | ID1, HSP90AA1, NPM3, SLC7A3, TMEM205 |
| ParE | RPL39, CCK, PLAT, BCL2L1, ZFP36 |
| PGCLC | POU5F1, SOX17, TFAP2C, NANOG, MKRN1 |
| PM | MESP1, FOXH1, CDX2, RBP1, HMGB3 |
| PS | VRTN, HAS2, EOMES, DUT, SP5 |
| STB | RASA1, CD55, BHLHE40, CSNK1A1, MEX3D |
| VE | SPINK1, PDZK1, MTTP, HNF4A, F2, APOA1 |
| ysMeso | SLC9A3R1, MAF, GNG5, BNC1, EPHA7 |